CDS

Accession Number TCMCG051C37206
gbkey CDS
Protein Id XP_002319696.1
Location complement(join(4378616..4378778,4379636..4379751,4379842..4379990,4380249..4380435))
Gene LOC7489670
GeneID 7489670
Organism Populus trichocarpa

Protein

Length 204aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA17973
db_source XM_002319660.3
Definition putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Populus trichocarpa]

EGGNOG-MAPPER Annotation

COG_category J
Description Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1
KEGG_TC -
KEGG_Module M00425        [VIEW IN KEGG]
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko00002        [VIEW IN KEGG]
ko03009        [VIEW IN KEGG]
ko03032        [VIEW IN KEGG]
KEGG_ko ko:K11128        [VIEW IN KEGG]
EC -
KEGG_Pathway ko03008        [VIEW IN KEGG]
map03008        [VIEW IN KEGG]
GOs GO:0000154        [VIEW IN EMBL-EBI]
GO:0000454        [VIEW IN EMBL-EBI]
GO:0001522        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003676        [VIEW IN EMBL-EBI]
GO:0003723        [VIEW IN EMBL-EBI]
GO:0005488        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005730        [VIEW IN EMBL-EBI]
GO:0005732        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006364        [VIEW IN EMBL-EBI]
GO:0006396        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0009451        [VIEW IN EMBL-EBI]
GO:0009507        [VIEW IN EMBL-EBI]
GO:0009534        [VIEW IN EMBL-EBI]
GO:0009535        [VIEW IN EMBL-EBI]
GO:0009536        [VIEW IN EMBL-EBI]
GO:0009579        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010467        [VIEW IN EMBL-EBI]
GO:0016020        [VIEW IN EMBL-EBI]
GO:0016070        [VIEW IN EMBL-EBI]
GO:0016072        [VIEW IN EMBL-EBI]
GO:0016074        [VIEW IN EMBL-EBI]
GO:0022613        [VIEW IN EMBL-EBI]
GO:0030515        [VIEW IN EMBL-EBI]
GO:0031118        [VIEW IN EMBL-EBI]
GO:0031429        [VIEW IN EMBL-EBI]
GO:0031974        [VIEW IN EMBL-EBI]
GO:0031976        [VIEW IN EMBL-EBI]
GO:0031981        [VIEW IN EMBL-EBI]
GO:0031984        [VIEW IN EMBL-EBI]
GO:0032991        [VIEW IN EMBL-EBI]
GO:0034357        [VIEW IN EMBL-EBI]
GO:0034470        [VIEW IN EMBL-EBI]
GO:0034513        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0034660        [VIEW IN EMBL-EBI]
GO:0042254        [VIEW IN EMBL-EBI]
GO:0042651        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043228        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043232        [VIEW IN EMBL-EBI]
GO:0043233        [VIEW IN EMBL-EBI]
GO:0043412        [VIEW IN EMBL-EBI]
GO:0044085        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044428        [VIEW IN EMBL-EBI]
GO:0044434        [VIEW IN EMBL-EBI]
GO:0044435        [VIEW IN EMBL-EBI]
GO:0044436        [VIEW IN EMBL-EBI]
GO:0044444        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044452        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0055035        [VIEW IN EMBL-EBI]
GO:0070013        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0071840        [VIEW IN EMBL-EBI]
GO:0072588        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0097159        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901363        [VIEW IN EMBL-EBI]
GO:1902494        [VIEW IN EMBL-EBI]
GO:1990904        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGAGGCCACCAAGAGGCGGCGGATTTAGGGGAGGTAGAGACGGCGGGTTTAGGGGAGGTAGAGACGGCGGGTTTAGGGGAGGTAGAGACGGCGGTTTTAGGGGAGGTAGAGACGGCGGTTTCAGGGGCGGACGTGGCGGACGTGGCGGCGGGTTTCGTGATGAAGGCCCTCCTTCTGAAGTAATAGAGGTTTCATCGTTTCTTCATGCATGTGAAGGAGATGCAGTGACAAAACTAACCAATGAGAAAATTCCATACTTCAATGCTCCGATCTTTTTGCAGAATAAGACCCAGATAGGGAAAGTTGATGAAATCTTCGGTCCCATTAATGAATCTTATTTTTCTATCAAAATGATGGAAGGAATTGTGGCAACTTCGTATGCTCCAGGGGATAAGTTTTATATTGATCCGAGTAAACTCTTGCCTCTTGCAAGATTTCTTACACAACCAAAGGGACAAGCACAAGGTGGCAGAGGTGGTGGTCGTGGAGGAAGAGGCAGAGGCGGTTTTGGTGGTGGCAGAGGTGATTTCCGTGGGAGAGGCAGAGGCAGAGGTCCACCAAGAGGTGGTGGCCGTGGACGTGGTGGTGGCTTTAGGGGAAGAGGGAGGGGATAA
Protein:  
MRPPRGGGFRGGRDGGFRGGRDGGFRGGRDGGFRGGRDGGFRGGRGGRGGGFRDEGPPSEVIEVSSFLHACEGDAVTKLTNEKIPYFNAPIFLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYAPGDKFYIDPSKLLPLARFLTQPKGQAQGGRGGGRGGRGRGGFGGGRGDFRGRGRGRGPPRGGGRGRGGGFRGRGRG